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Contents
Contents
Index
Plotting and Analysis for Neural Database-Oriented Research Applications (PANDORA) Toolbox --
User's and Programmer's Manual
Cengiz Günay
Date:
Document Revision , October 13, 2008
Contents
1 Introduction
1.1 What is the PANDORA Toolbox?
1.2 Why did you make it?
1.3 How is it implemented?
1.4 How can I use it?
1.5 Who is it made for?
1.6 Finding your way around
1.7 Overview of this document
2 Installation
1 Software Architecture
3 Toolbox Components
3.1 Databases hold all the information
3.2 Datasets create the databases
3.3 Bundling the database and dataset together
3.4 Wrapper classes hold raw data
3.5 Profiles hold results of measurements
3.6 Integrated plotting for easy visualization
3.7 Miscellaneous classes
4 Programming Conventions
4.1 Using property structures for passing optional arguments to methods
4.2 Overloaded operators for transparent access to object contents
4.3 Troubleshooting errors
4.4 Creating a new class
2 User's Manual
5 Recipes for Common Tasks
5.1 Loading a database
5.2 Finding constrained subsets in a database
5.3 Sorting the database according to a measure
5.4 Preprocessing a raw (physiology) database
5.5 Making a database by merging multiple rows from another database
6 Visualization
6.1 Visualizing traces
6.2 Displaying database contents
6.3 Plotting all measure histograms
6.4 Plotting all parameter histograms
6.5 Plotting database statistics
6.6 Plotting parameter-measure variations
6.7 Insets
6.8 Generating a report comparing two databases
Bibliography
Appendices
1 Function Reference
1.1 Class
chans_db
1.2 Class
cip_trace
1.3 Class
cip_trace_allspikes_profile
1.4 Class
cip_trace_profile
1.5 Class
cip_traces_dataset
1.6 Class
cip_traceset
1.7 Class
cip_traceset_dataset
1.8 Class
cluster_db
1.9 Class
corrcoefs_db
1.10 Class
dataset_db_bundle
1.11 Class
doc_generate
1.12 Class
doc_multi
1.13 Class
doc_plot
1.14 Class
histogram_db
1.15 Class
model_ct_bundle
1.16 Class
model_ranked_to_physiol_bundle
1.17 Class
params_cip_trace_fileset
1.18 Class
params_tests_dataset
1.19 Class
params_tests_db
1.20 Class
params_tests_fileset
1.21 Class
params_tests_profile
1.22 Class
period
1.23 Class
physiol_bundle
1.24 Class
physiol_cip_traceset
1.25 Class
physiol_cip_traceset_fileset
1.26 Class
plot_abstract
1.27 Class
plot_bars
1.28 Class
plot_errorbar
1.29 Class
plot_errorbars
1.30 Class
plot_image
1.31 Class
plot_inset
1.32 Class
plot_simple
1.33 Class
plot_stack
1.34 Class
plot_superpose
1.35 Class
ranked_db
1.36 Class
results_profile
1.37 Class
script_array
1.38 Class
script_array_for_cluster
1.39 Class
script_factory
1.40 Class
spike_shape
1.41 Class
spike_shape_profile
1.42 Class
spikes
1.43 Class
spikes_db
1.44 Class
sql_portal
1.45 Class
stats_db
1.46 Class
tests_3D_db
1.47 Class
tests_db
1.48 Class
trace
1.49 Class
trace_profile
1.50 Utility functions
Index
About this document ...
Cengiz Gunay 2008-10-13
